Assignment 6
Due Thursday, July 9, 12:00 AM
Using MMTSB, create a peptide 15-mer. Use only the terminal in this process. Use the "-par" command to block the ends and include CMAP energy terms (you may have to investigate the MMTSB manual pages). At each (appropriate) stage, write out the PDB and a PSF file (how many PSF files will you need?). Find the energy before minimization, after minimization and after some dynamics steps. (20 points)