- Watch lectures and learn about dynamical properties from simulations, and how thermostats work (Lectures on Canvas).
- Introduction to NAMD
- CHARMMGUI
- QwikMD
- Advanced Data Analysis
By the beginning of this week you should have a good idea about the system(s) you will study for the final project. This week's assignment is worth double points.
In addition, more background reading needs to be completed: