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Week 1
Week 2
Lecture: Statistical Mechanics 2
Lecture: Equilibrium Properties
Lecture: Scripting and programming I
Lab: VMD Trajectory analysis
Lab: VMD Movie Making
Lab: Introduction to NAMD
Background: shells and plotting
Assignment 3
Assignment 4
Week 3
Files
Troublshooting
CHEM 181
Introduction to Molecular Simulation
ensembles
constant pressure MD
constant T MD
Questions for Lecture 3:
Question 1
Question 2
Question 3